top of page
mmu_ciAsphd1_111
Basic information of circular RNA
PanCircBase ID:
mmu_ciAsphd1_111
mm39_Chr. Position ID:
chr7|126548618|126548729|-
Gene name:
Asphd1
Transcript:
ENSMUST00000052937.12
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
111
Exon/intron sizes in nt:
111
Flanking exon/introns:
chr7:126547811-126548729
Splice length:
111
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGGGCGCCCAAGAAGGGGTGTGTAGGAGGTCGGGAATCGGAGAGGACAGACCCGACCCTTTCGAGGGAGAAGACAGGTCAAGGAGAGAGGAAAGAGAAAGAGCCGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAAGAGAAAGAGCCGCGTGA
59.97
CTCCGATTCCCGACCTCCTA
60.18
63
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAAGAGAAAGAGCCGCGTGA
59.97
CGATTCCCGACCTCCTACAC
59.62
60
PCR template sequence:
CCGACCCTTTCGAGGGAGAAGACAGGTCAAGGAGAGAGGAAAGAGAAAGAGCCGCGTGAGTGGGCGCCCAAGAAGGGGTGTGTAGGAGGTCGGGAATCGGAGAGGACAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GAGAAAGAGCCGCGTGAGTGGGCGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.281271056
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page