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mmu_ciCcdc91_1561
Basic information of circular RNA
PanCircBase ID:
mmu_ciCcdc91_1561
mm39_Chr. Position ID:
chr6|147437289|147438850|+
Gene name:
Ccdc91
Transcript:
ENSMUST00000032441.14
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
1561
Exon/intron sizes in nt:
1561
Flanking exon/introns:
chr6:147437289-147438873
Splice length:
1561
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGTGTGTGCATTGGCCTGAGAATGAAAAATTGCATATGCTAGCAATTTGATATAATCCAAATGGATGGAAAGTCCCCAGGAGCATAGGTTCTGGTCAGTCACACCACACAGGCGGTGGAGGCATTTTGTTAGAAGCCTCCAGTCGTGGGCTGGAGAGGTGGCTCAGAGAGTGGGAGCACTGGCCTTTCTTGCCAGCAGACCATTTCTGGTTCCCAGAACCCACATGGCAGCTCATAACTGTCTGCAACTCTAGTTCCATGGCTCCTTGTGGCCTCCAAGTGTTGCTGTTTGCATGTAGTAAAATACATACATTTAGGCACACACACATAATACATAAATAAACTGAACCTCAAACAAAAGTCTGTAGTCAGTAGTTAGCATATCCATGCATTCAGCATCTAATTCAACCAACCATATATCAGAAGTACTCAGAGATACATGTTGTATATGTTGTAGGTATATGTTCACGGAGCCCCCATTTCCACAAACAACTATTTAACTTATATTCCTGTTGTGTACATATTTTAAATAGCTGGAGACAATTTAGTGTATGTGGTAGGATACATAGGTTATATGAAAACATTGTGCTATTTTTAGACCCCTGGGACTTTGGTGTCATCGGGGGCTGGTCTGTGTGTCCTGTTAAGTTTTTGGTTTTTTTGTTTTCTGTTTTTTTTAAGCAGGTTTTGATGGGGATTTTTATTGTTTCCTACTCCTCCAAGGCTTTCATTTCTGTTTTGTCTTCATTTATTTTCAAAGCAAGCAGTATTATACTGCATGTGTGATTTCAGATTTGGCATGTGGGAAGTTAGATGCCCATGTGCGTGTTCCAGCACACCTTTTCAGGGACGACACTAGCATGTGCTCTCAGCTCTCCTCTGTCCTTCTATCTGTCTGTCTGTCCATCTATCACGAATCTTCTATCACTTGTCATCTCTCAGTTATCATCTATATATATCCATCAGTGTTATCTTCTCTCTATATCCATCGGTGTCTTTGTTGTCTGTCTCTTTGTCCACCCATCTGTGTGTCTGTATAAGCCAGTTCATGGAAAGGACTTATGGAGGTTGGTTGATATGCTCCTGGTCTTTATTCATTGTTTTGTGTTTGTGGTACCTATATATATAGGTATGTGCATGTAGCAGGACGTGGCCTCTGCGTGTAGGAGGACGTGCCCATGTGCTGTCTTGTGGAGAGTGTCAGAATGCTTTCATCTCTCACTCCGCACTCAGTCTTCTCTGACCTAGGGCTGGTGGCTGGCCCTTGGGCTCCGTGGACAGCCCTTTCTCTGTGTTTTTGTGCTGGAGTTACACACTTGGCTTTTATGAGGGTGTGTAGGGAACCGGCACTCTGGTCCTCATACTTGCACGACAAGCATTTTACCCTCCAGCTGTCTCTCCAGCCTGTTCTTGTTCATTTAAAATTTTAGTGTTCTGTCAATATTCCATATTGGCCTAGAAATTAGTTAGCTTAGACATTAAGCCATTTTACCTGATTTCCTTCCCTGATAAATATTTTCTGTTTATTGAAAAAGTACTTTGTGCTGTGGAACAGTGTAGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCATTTTACCTGATTTCCTTCCC
60.14
ACCTATGCTCCTGGGGACTT
59.96
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCATTTTACCTGATTTCCTTCCC
60.14
AACCTATGCTCCTGGGGACT
59.96
170
PCR template sequence:
ATTAGTTAGCTTAGACATTAAGCCATTTTACCTGATTTCCTTCCCTGATAAATATTTTCTGTTTATTGAAAAAGTACTTTGTGCTGTGGAACAGTGTAGAGTGTGTGTGCATTGGCCTGAGAATGAAAAATTGCATATGCTAGCAATTTGATATAATCCAAATGGATGGAAAGTCCCCAGGAGCATAGGTTCTGGTCAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
24
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-134-5p(1), mmu-miR-141-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-199a-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-298-5p(1), mmu-miR-326-3p(1), mmu-miR-143-3p(1), mmu-miR-425-5p(1), mmu-miR-297a-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-410-3p(1), mmu-miR-369-3p(1), mmu-miR-335-3p(1), mmu-miR-188-3p(1), mmu-miR-3065-5p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGAACAGTGTAGAGTGTGTGTGCATT
siRNA sets
AATGCACACACACTCTACA,ACACACTCTACACTGTTCC,ATGCACACACACTCTACAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.894974613
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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