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mmu_ciCcdc91_1561

Basic information of circular RNA
PanCircBase ID:

mmu_ciCcdc91_1561

mm39_Chr. Position ID:

chr6|147437289|147438850|+

Gene name:

Ccdc91

Transcript:

ENSMUST00000032441.14

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

5

Exon/intron offsets:

0

Genomic length:

1561

Exon/intron sizes in nt:

1561

Flanking exon/introns:

chr6:147437289-147438873

Splice length:

1561

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTGTGTGTGCATTGGCCTGAGAATGAAAAATTGCATATGCTAGCAATTTGATATAATCCAAATGGATGGAAAGTCCCCAGGAGCATAGGTTCTGGTCAGTCACACCACACAGGCGGTGGAGGCATTTTGTTAGAAGCCTCCAGTCGTGGGCTGGAGAGGTGGCTCAGAGAGTGGGAGCACTGGCCTTTCTTGCCAGCAGACCATTTCTGGTTCCCAGAACCCACATGGCAGCTCATAACTGTCTGCAACTCTAGTTCCATGGCTCCTTGTGGCCTCCAAGTGTTGCTGTTTGCATGTAGTAAAATACATACATTTAGGCACACACACATAATACATAAATAAACTGAACCTCAAACAAAAGTCTGTAGTCAGTAGTTAGCATATCCATGCATTCAGCATCTAATTCAACCAACCATATATCAGAAGTACTCAGAGATACATGTTGTATATGTTGTAGGTATATGTTCACGGAGCCCCCATTTCCACAAACAACTATTTAACTTATATTCCTGTTGTGTACATATTTTAAATAGCTGGAGACAATTTAGTGTATGTGGTAGGATACATAGGTTATATGAAAACATTGTGCTATTTTTAGACCCCTGGGACTTTGGTGTCATCGGGGGCTGGTCTGTGTGTCCTGTTAAGTTTTTGGTTTTTTTGTTTTCTGTTTTTTTTAAGCAGGTTTTGATGGGGATTTTTATTGTTTCCTACTCCTCCAAGGCTTTCATTTCTGTTTTGTCTTCATTTATTTTCAAAGCAAGCAGTATTATACTGCATGTGTGATTTCAGATTTGGCATGTGGGAAGTTAGATGCCCATGTGCGTGTTCCAGCACACCTTTTCAGGGACGACACTAGCATGTGCTCTCAGCTCTCCTCTGTCCTTCTATCTGTCTGTCTGTCCATCTATCACGAATCTTCTATCACTTGTCATCTCTCAGTTATCATCTATATATATCCATCAGTGTTATCTTCTCTCTATATCCATCGGTGTCTTTGTTGTCTGTCTCTTTGTCCACCCATCTGTGTGTCTGTATAAGCCAGTTCATGGAAAGGACTTATGGAGGTTGGTTGATATGCTCCTGGTCTTTATTCATTGTTTTGTGTTTGTGGTACCTATATATATAGGTATGTGCATGTAGCAGGACGTGGCCTCTGCGTGTAGGAGGACGTGCCCATGTGCTGTCTTGTGGAGAGTGTCAGAATGCTTTCATCTCTCACTCCGCACTCAGTCTTCTCTGACCTAGGGCTGGTGGCTGGCCCTTGGGCTCCGTGGACAGCCCTTTCTCTGTGTTTTTGTGCTGGAGTTACACACTTGGCTTTTATGAGGGTGTGTAGGGAACCGGCACTCTGGTCCTCATACTTGCACGACAAGCATTTTACCCTCCAGCTGTCTCTCCAGCCTGTTCTTGTTCATTTAAAATTTTAGTGTTCTGTCAATATTCCATATTGGCCTAGAAATTAGTTAGCTTAGACATTAAGCCATTTTACCTGATTTCCTTCCCTGATAAATATTTTCTGTTTATTGAAAAAGTACTTTGTGCTGTGGAACAGTGTAGA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GCCATTTTACCTGATTTCCTTCCC

60.14

ACCTATGCTCCTGGGGACTT

59.96

169

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GCCATTTTACCTGATTTCCTTCCC

60.14

AACCTATGCTCCTGGGGACT

59.96

170

PCR template sequence:

ATTAGTTAGCTTAGACATTAAGCCATTTTACCTGATTTCCTTCCCTGATAAATATTTTCTGTTTATTGAAAAAGTACTTTGTGCTGTGGAACAGTGTAGAGTGTGTGTGCATTGGCCTGAGAATGAAAAATTGCATATGCTAGCAATTTGATATAATCCAAATGGATGGAAAGTCCCCAGGAGCATAGGTTCTGGTCAGT

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

24

Interacting miRNAs (#binding sites)

mmu-miR-20b-5p(1), mmu-miR-134-5p(1), mmu-miR-141-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-199a-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-298-5p(1), mmu-miR-326-3p(1), mmu-miR-143-3p(1), mmu-miR-425-5p(1), mmu-miR-297a-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-410-3p(1), mmu-miR-369-3p(1), mmu-miR-335-3p(1), mmu-miR-188-3p(1), mmu-miR-3065-5p(1), mmu-miR-670-5p(1)

siRNAs for circular RNA silencing
Junction sequence

GGAACAGTGTAGAGTGTGTGTGCATT

siRNA sets

AATGCACACACACTCTACA,ACACACTCTACACTGTTCC,ATGCACACACACTCTACAC

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.894974613

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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