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mmu_ciCrtc2_1053
Basic information of circular RNA
PanCircBase ID:
mmu_ciCrtc2_1053
mm39_Chr. Position ID:
chr3|90164718|90165771|+
Gene name:
Crtc2
Transcript:
ENSMUST00000029545.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
1053
Exon/intron sizes in nt:
1053
Flanking exon/introns:
chr3:90164718-90165771
Splice length:
1053
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATATCCTTCAAGAGTGATTTAAGGGCAAAGGAACAGGAAGGGGCTCTTTAGAGACTCACAGAGGGGAGGCGCTTTCTCCTTATATGCTCATGTTCATCTTTCTGCAGTTCTTTTACCCAGTCGTGAAAAGTGACTACAACCTGTGTGTCAGCACAGACTGTTGTGATGGGCAGCTGGTGTTTCTGTGGTTGTGCCCTCCTCAGTGCTGGTCTTGGCTGGCCTTACTTTTGCTCACTTGATTGTAAAGCAGGGCTCCCTGTCACCTGGGCAGGAGATTCAGTCCCTTTTCTCATTCTGTTGTGAACTTTGATTCCTAGAGACGCTACCATGTTTGTGTCCCTTACCCTACTCAGGCATTTGCTTAGGTTGTTCCACCTCTACTATGCTTGGCCTGATTTTTCCCCCTATTTATTTGTTTGTTTATTTGTTTGTTTACTTATTTACTTGACTTTCTGAGCATCTCTCTATGTAGTTCTGGTTGTGCTGGAGCTTGTCCAGGCTGGCCTATGTAGACTAGGTAGACATCCTCCTCCTCTGCTTCCTGAGTGCTAAGATTAAAGAGGTGTGCCAGGCCTGGTTTTCTTTTTTGTTTGTTTGGTTTTGGTTCTGTTTTGAGATGGTTTAATCCTGCAGTCTGGGATTTTTCTGAAACTTGACAGAAAAATGAGGTAGGGTTCAAACTTTTGGTGACGTCCTTGGCACAGCCTCCTAAGTACTGGGATCACAAGTGTAGACCACCATGCCTGCATTTATTCCATTTTATTGTTTGCTTATTTTTGTGGTCCAGGGCCTAACAAATTAGGTGGCCTTCATTGAGATGTAACCCTGGTTTCTCGTCCTTCTTCTTTCCTTCTGTTCTTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTAGAGACACGACATCTCACTATGTTGGGATTACAGCAGTGAGCCACTATATGTGACTTACTTGTATTGCCACACACTGTCTCCCTTATTCTGTCATCTGTTCTCTCTACTTTTTTTCCTTAACTATAGTTATCTAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGCCACACACTGTCTCCC
60.25
CCTCCCCTCTGTGAGTCTCT
59.67
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TATTGCCACACACTGTCTCCC
60
CCTCCCCTCTGTGAGTCTCT
59.67
142
PCR template sequence:
AGTGAGCCACTATATGTGACTTACTTGTATTGCCACACACTGTCTCCCTTATTCTGTCATCTGTTCTCTCTACTTTTTTTCCTTAACTATAGTTATCTACATATCCTTCAAGAGTGATTTAAGGGCAAAGGAACAGGAAGGGGCTCTTTAGAGACTCACAGAGGGGAGGCGCTTTCTCCTTATATGCTCATGTTCATCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-26a-5p(1), mmu-miR-298-5p(1), mmu-miR-709(1), mmu-miR-495-3p(1), mmu-miR-434-3p(1), mmu-miR-26b-5p(1), mmu-miR-22-3p(1), mmu-miR-182-5p(1), mmu-miR-466d-3p(1), mmu-miR-224-5p(1), mmu-miR-466b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATAGTTATCTACATATCCTTCAAGA
siRNA sets
GAAGGATATGTAGATAACT,AAGGATATGTAGATAACTA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.941975011
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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