top of page
mmu_ciDagla_1738
Basic information of circular RNA
PanCircBase ID:
mmu_ciDagla_1738
mm39_Chr. Position ID:
chr19|10240633|10242371|-
Gene name:
Dagla
Transcript:
ENSMUST00000039327.11
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
1738
Exon/intron sizes in nt:
1738
Flanking exon/introns:
chr19:10240592-10242371
Splice length:
1738
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTACCCATAGTTGCTTGCCTCGGGTCTTCTCTCTGCCATGGAAGTGCCTTTCACTCCTCTGGTAATGCTAGGTGGGTGGGGCTGGTAGGAAGTGGGACATTGTGAGCAGAGTAACAGCCTGCTTGTGGGCCTTTTCGCTGAAAAACTGCCCGACCCTGCAAAGCAGACATTCACCTGTTTCACTGCGGAAACAGAAAGCCTTGATGACTGATTTGGTACCCTTGGAACATGGTTTAATTTAAAAGTACCATGTGGTCAGCAGTGGATGGATCTGGAAGGTCTAGGGTGCTGTTGAGTGCTTAGCCTGGGGCTGGATGGCACACATCTCTGAGGTCGGAGATGTGGATAGACCAATAGTGTTGAGGAGCAAGCTCTGCAGAAGGTGGCTCTGAGCAGGAAGGGAGATAGAACCCCTCAGAGTTGGGTAGGCAGGTTAGCAGCCATCCAGCCCTACCCCTCATTTTGCAGATCAGTCAGCTGAGACCCAGAAAGATGGACTGATTTGCTCAGTATCCCACAGCTAGGCAGTAGCAGAGCTTGAGAAGTCAGAAGACAGTGAAGCGCCCACCTCAGACACCCTGGGGAAGCCTGGAGTGGCCCTTCCCTAACAGTAGCCCCCAGGGACCTTAGAGCGAGTACCTAAGGAAGGAAGGAAGGCCCAGAGTTCCCTGGCAGCTGGGGAGTACCTCATGGGGCTGTCTGGGAATGCCTGAGAGATCCTGGTCCAGGTCTGGCTGCAGGTGTGCCTTGCAGAGGGCAGGGAATGGAGCCCAAGAGGTGGAAACCAGGCTTGCCTGGGCCTTAGGCACACTGTTCACCCCATAAAACAGAGTCAGCACTGCTGTGAGGAGCCAGTGAGAAGAGCACAGTCCAGTTAGACACAGACAGCCAGGGGCAGATCCCAGAGGAGGGATTTTTCTCCAGCTTGTATTTTGTCACCAAAGAACTATACTTGACTGCCAGTCTTTGAAAATTTTACATAACCGCCTGTATGTTCAAACCTGGCGCCCTGAGCTGAGCAGCTGAAGCTGAGCACAGTTCCGTTCCGTGTGGCCCCTTAGAGGTCTGAGCAGGTAGCCACTGGCGTTTTCCTCCTGACTTGCCAGGCACTCAAGGACGAGACCAGTGAGATAGATTCAGTTGCTGTGAGTTTGTTCTCGCTCTGCCCTCTCCTGATAGGTTCAAGGCAACAAAAGGCAGGGGAAACCCAGGGCCACAGCTAGCAGGGCTTGTCTGCCTCTGTTCTTTCCTTTTTACCCAAGGGCTGGGGCCAACTTGAAGCCAGAGAGGCCACCGACTATGAATTGTGCTTCTCACGCACATCACAGGGGCCCCTGAGCTGAGGCTGCTGAGAAGCAAGGGAACCTCGAGGTTTGGGAGATGTAGCAGGACTTCCAGGGTCACAGCTGGTAGGACAGCGGTAGCCGGATGCCTTGTGTGGCTTCACTTCTAGAGAAGGGTTGCCTGGACTTGATCCTGGGTATCTAGAGAGAGAAGAGGTATCCGCCTAGGTTGGCACCTGCGAGCAAAGGGACCTCAGTGGAGAGAAGAGGCCTGGGAGGTGGAGAAGGGTCAGCAGCTAAGATGGTAAAAGAACAGAAACAAAAGAGTCTCCAGGTTCCTGCCATAAGGAGGTGCGGCATGCACGCCTGAGGGCAAAGCTGCCCAGAATTGTAGCGATTTCCGGTCACCTTGCCCTTGGTGTTCACTCATGGTCTCTCCTTTCTCCTGCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAAAGCTGCCCAGAATTGT
59.68
CCCACCCACCTAGCATTACC
59.82
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAAAGCTGCCCAGAATTGT
59.68
CCCCACCCACCTAGCATTAC
59.82
164
PCR template sequence:
GTGCGGCATGCACGCCTGAGGGCAAAGCTGCCCAGAATTGTAGCGATTTCCGGTCACCTTGCCCTTGGTGTTCACTCATGGTCTCTCCTTTCTCCTGCTGGTAAGTACCCATAGTTGCTTGCCTCGGGTCTTCTCTCTGCCATGGAAGTGCCTTTCACTCCTCTGGTAATGCTAGGTGGGTGGGGCTGGTAGGAAGTGGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
23
Interacting miRNAs (#binding sites)
mmu-miR-328-3p(2), mmu-miR-326-3p(2), mmu-miR-210-3p(1), mmu-miR-9-5p(1), mmu-miR-27a-3p(1), mmu-miR-150-5p(1), mmu-miR-222-3p(1), mmu-miR-185-5p(1), mmu-miR-339-5p(1), mmu-miR-381-3p(1), mmu-miR-495-3p(1), mmu-miR-214-3p(1), mmu-miR-434-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-127-5p(1), mmu-miR-499-5p(1), mmu-miR-690(1), mmu-miR-29b-2-5p(1), mmu-miR-466a-5p(1), mmu-miR-207(1), mmu-miR-490-3p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTTCTCCTGCTGGTAAGTACCCATA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.579782505
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page