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mmu_ciItpr1_743
Basic information of circular RNA
PanCircBase ID:
mmu_ciItpr1_743
mm39_Chr. Position ID:
chr6|108390914|108391657|+
Gene name:
Itpr1
Transcript:
ENSMUST00000032192.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
37
Exon/intron offsets:
0
Genomic length:
743
Exon/intron sizes in nt:
743
Flanking exon/introns:
chr6:108390914-108393770
Splice length:
743
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAAGTCTGAGGCTGGAAGAAGTGGACTTAAACTTGAGAAGTGTATTTTCTGAAGCCACAAAACATACAAGCTCCGCTACACAGAAGAGGTTTGTGGGGCCAGGAGTACCAGGTCTTTTGGTAAACAAAAACTCCCAGAAGGGGTTCCACGGCAGACAGTTGATGCTGAGCATTAGCCATAATTATTGTCTGAAGTCTATATAGAGTGTCCCTGGGTGGCATAGGCCTCCTCACACTGTGACAGCTGAGTCTATAAACATTTCTAGGGACCACTTGGAAACACCTTTGTCTTTATCACCCTAGCTCTAAAGATGTCACTAGACATCCATTCTGCTGCCCTCTGTTGGTCTATGCAGTCTCAGAGGGACACTCCATTTCTTAGGAGGGAAATTCAAACCACCATTCAGTGGGAAGGATGTCGAGCTACAACAATGTGTGAACTAGAGAAATGGCTGCCATTGGAAAGCACAAGCCCTTCAACAGTGCCTGGCATACCGTATAGTGAGCACTCAAGGGCTTCTCTTACAATGCCTAAGGTTACTGTTGTGGTTATAAAAGTTGCTATCATTAGGAAAAGTAACTGAGTCACCCTGTGGCTCCATAATTTATGTAATTTATGACAAATAAATGTACTGATTGATTTCTCAGCCCTGGGCCCTGGTGATACGTAGTGAGAAAAGCCCCTTCCTCCCCCTTTCATAAAGCCTCGAGCTTTGGAAGAGGCATGGCCACGGATCAGCTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGAAAAGCCCCTTCCTCCC
60.03
CCCCACAAACCTCTTCTGTGT
60.13
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGAAAAGCCCCTTCCTCCC
60.03
ACCTCTTCTGTGTAGCGGAG
58.82
162
PCR template sequence:
TCTCAGCCCTGGGCCCTGGTGATACGTAGTGAGAAAAGCCCCTTCCTCCCCCTTTCATAAAGCCTCGAGCTTTGGAAGAGGCATGGCCACGGATCAGCTAGTAAAGTCTGAGGCTGGAAGAAGTGGACTTAAACTTGAGAAGTGTATTTTCTGAAGCCACAAAACATACAAGCTCCGCTACACAGAAGAGGTTTGTGGGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-27b-3p(1), mmu-miR-217-5p(1), mmu-miR-153-3p(1), mmu-miR-384-3p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
CACGGATCAGCTAGTAAAGTCTGAGG
siRNA sets
CTTTACTAGCTGATCCGTG,ACTTTACTAGCTGATCCGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.620633645
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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