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mmu_ciItpr1_743

Basic information of circular RNA
PanCircBase ID:

mmu_ciItpr1_743

mm39_Chr. Position ID:

chr6|108390914|108391657|+

Gene name:

Itpr1

Transcript:

ENSMUST00000032192.9

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

37

Exon/intron offsets:

0

Genomic length:

743

Exon/intron sizes in nt:

743

Flanking exon/introns:

chr6:108390914-108393770

Splice length:

743

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTAAAGTCTGAGGCTGGAAGAAGTGGACTTAAACTTGAGAAGTGTATTTTCTGAAGCCACAAAACATACAAGCTCCGCTACACAGAAGAGGTTTGTGGGGCCAGGAGTACCAGGTCTTTTGGTAAACAAAAACTCCCAGAAGGGGTTCCACGGCAGACAGTTGATGCTGAGCATTAGCCATAATTATTGTCTGAAGTCTATATAGAGTGTCCCTGGGTGGCATAGGCCTCCTCACACTGTGACAGCTGAGTCTATAAACATTTCTAGGGACCACTTGGAAACACCTTTGTCTTTATCACCCTAGCTCTAAAGATGTCACTAGACATCCATTCTGCTGCCCTCTGTTGGTCTATGCAGTCTCAGAGGGACACTCCATTTCTTAGGAGGGAAATTCAAACCACCATTCAGTGGGAAGGATGTCGAGCTACAACAATGTGTGAACTAGAGAAATGGCTGCCATTGGAAAGCACAAGCCCTTCAACAGTGCCTGGCATACCGTATAGTGAGCACTCAAGGGCTTCTCTTACAATGCCTAAGGTTACTGTTGTGGTTATAAAAGTTGCTATCATTAGGAAAAGTAACTGAGTCACCCTGTGGCTCCATAATTTATGTAATTTATGACAAATAAATGTACTGATTGATTTCTCAGCCCTGGGCCCTGGTGATACGTAGTGAGAAAAGCCCCTTCCTCCCCCTTTCATAAAGCCTCGAGCTTTGGAAGAGGCATGGCCACGGATCAGCTA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GAGAAAAGCCCCTTCCTCCC

60.03

CCCCACAAACCTCTTCTGTGT

60.13

170

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GAGAAAAGCCCCTTCCTCCC

60.03

ACCTCTTCTGTGTAGCGGAG

58.82

162

PCR template sequence:

TCTCAGCCCTGGGCCCTGGTGATACGTAGTGAGAAAAGCCCCTTCCTCCCCCTTTCATAAAGCCTCGAGCTTTGGAAGAGGCATGGCCACGGATCAGCTAGTAAAGTCTGAGGCTGGAAGAAGTGGACTTAAACTTGAGAAGTGTATTTTCTGAAGCCACAAAACATACAAGCTCCGCTACACAGAAGAGGTTTGTGGGG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

5

Interacting miRNAs (#binding sites)

mmu-miR-27b-3p(1), mmu-miR-217-5p(1), mmu-miR-153-3p(1), mmu-miR-384-3p(1), mmu-miR-697(1)

siRNAs for circular RNA silencing
Junction sequence

CACGGATCAGCTAGTAAAGTCTGAGG

siRNA sets

CTTTACTAGCTGATCCGTG,ACTTTACTAGCTGATCCGT

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.620633645

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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