top of page
mmu_ciNaa15_1264
Basic information of circular RNA
PanCircBase ID:
mmu_ciNaa15_1264
mm39_Chr. Position ID:
chr3|51363424|51364688|+
Gene name:
Naa15
Transcript:
ENSMUST00000193266.6
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
11
Exon/intron offsets:
0
Genomic length:
1264
Exon/intron sizes in nt:
1264
Flanking exon/introns:
chr3:51363424-51364718
Splice length:
1264
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAAAACCATTACCCCCCTTTCCTTATAAGGCTATAAGCTTATAAGCTTCTAGGTAGAGAAAGTAAAATATAAGAAATATCAGTTTGATTTTTTTTTTCTCTTGGACTTGTCATAGCCACATTTATTTGCTCATTTATCAATAACTATACAAAATACACATATACAAAAGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGCGCATGTGCACCTATGTGTGACTCTGTTGACAGCTCTTGACTGTGGTGTGTTTTCTGCTGACAGTTGAGTGTGATCATGTGTAAGCACCTGATGTTAGTAAAGTCAAACTATTTTATTTGGAGCATACAGGTTACCATCTCCTGACTTAATTATTGAGCTAGGCATGAAAATCTCATGTCATATGTTCTAACATCTTTAAGTTGTCTGTTTTCTAATTTTTAGTATGCTTAGTAATCAAGCCTTTTATAAAAGGAGTTATTTATAAACCAATAATATATATTTAGAAAGAAAATAGAATTAAGTAGCATTCCCCTTTTGTTGACTGTACTGGGTATTAATCCAAATCTTCATACATACTAGACAGACACTGATGCTGAGTTGCACCCGCCTTCAAGTGTTGTTTGTTATTATTGCCTTTATTATTACTGTTTGAGGCATGGTCTTTATAGTGGGCTGGCCTCAAAAACGAGACTTCTTTTGCCTCAGCCTCCTAGGTTCTGGGATTACCAGTTTGTACCACCACTTTTTGACCCAGAACTTTAAAATCATTTTCTAAAATTATATAATTTATTTTGAATTAGGTGTCTTATGTGTTTATTCTACTGTGTGTGGGTATAAGTCAAAGGACAGTTTATGAGAATTACTTTTTCCTTTGTTCCATATGGATCTGTAGGTTTGAACAGATCATCAGGCGTGGTGGCAGTTTCTTTTTACCTGCTGAGCCTTCTTGCTTGCTACCCTAACCTAAATGTTTTAAAGCCATGTTTTCCTCAGTTTTGTGGCTTTGAGATAAATGAATTAGAATAGTGGGGGAATGTTCACTATTGCCTTTCTGACCTCTGGTTCGGCTTTTCTGCAAGGTGGTTTCCAGGAGAGTTCCGTCCAACCTCCCCTAGTACTGGAAGTAGAAGTTCAAGCTACTACATGTGGCCTTTTAAAGGATTGTTGCTGGTCTTGAGTCAGAAGAACACTTTTTCTTTCATTTGTTTAATATTTATTATTTTATAGATCATAAATTACCAAATATAGTAAAATTATCATACTTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGGTCTTGAGTCAGAAGA
58.68
TTTTACTTTCTCTACCTAGAAGCTT
55.69
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCTGGTCTTGAGTCAGAAGA
58.68
ATTTTACTTTCTCTACCTAGAAGCT
55.5
170
PCR template sequence:
TGCTGGTCTTGAGTCAGAAGAACACTTTTTCTTTCATTTGTTTAATATTTATTATTTTATAGATCATAAATTACCAAATATAGTAAAATTATCATACTTAGTAAAAACCATTACCCCCCTTTCCTTATAAGGCTATAAGCTTATAAGCTTCTAGGTAGAGAAAGTAAAATATAAGAAATATCAGTTTGATTTTTTTTTTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-181b-5p(1), mmu-miR-495-3p(1), mmu-miR-214-3p(1), mmu-miR-24-3p(1), mmu-miR-297a-5p(1), mmu-miR-466d-3p(1), mmu-miR-342-3p(1), mmu-miR-377-3p(1), mmu-miR-1187(1), mmu-miR-335-3p(1), mmu-miR-3065-5p(1), mmu-miR-466b-3p(1), mmu-miR-540-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTATCATACTTAGTAAAAACCATTA
siRNA sets
TAATGGTTTTTACTAAGTA, AATGGTTTTTACTAAGTAT, ATGGTTTTTACTAAGTATG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.921963942
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page