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mmu_ciNadk2_152
Basic information of circular RNA
PanCircBase ID:
mmu_ciNadk2_152
mm39_Chr. Position ID:
chr15|9103126|9103278|+
Gene name:
Nadk2
Transcript:
ENSMUST00000190591.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
152
Exon/intron sizes in nt:
152
Flanking exon/introns:
chr15:9103126-9103413
Splice length:
152
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTACGGAAACTGGTTGTGTACTGCGGAGTCACTGTGCGCTGTGTAATGGGCTATGCAATGCTGTATATTTGAGTTGTGTTGTGTATTTGTGTTGTGTATTGCGGAGTTACTGTGGGCTGTGTAATGGGCTATGTAATGCTGTGTATTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGTGTTGTGTATTGCGGAGT
58.43
ATAGCCCATTACACAGCGCA
59.82
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGTTGTGTATTGCGGAGT
57.75
CATAGCCCATTACACAGCGC
59.41
120
PCR template sequence:
GTTGTGTTGTGTATTTGTGTTGTGTATTGCGGAGTTACTGTGGGCTGTGTAATGGGCTATGTAATGCTGTGTATTTGTGAGTACGGAAACTGGTTGTGTACTGCGGAGTCACTGTGCGCTGTGTAATGGGCTATGCAATGCTGTATATTTGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGCTGTGTATTTGTGAGTACGGAAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.252567089
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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