top of page
mmu_ciNbea_2106
Basic information of circular RNA
PanCircBase ID:
mmu_ciNbea_2106
mm39_Chr. Position ID:
chr3|55554992|55557098|-
Gene name:
Nbea
Transcript:
ENSMUST00000029374.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
50
Exon/intron offsets:
0
Genomic length:
2106
Exon/intron sizes in nt:
2106
Flanking exon/introns:
chr3:55554969-55557098
Splice length:
2106
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGCAGCAGCCTTGGAGGGGTTTTTCTTTCCTTTGTGTCCGGGTAGAAATCAAATAAAATGGTATTTCAGGTATTTCAGGGCTTTTCAGAGGCTTCCCAGTTTATCTGTTGACTTGGAAGCTCAAGGGTATGCTAGAAGAAAGCAGCTTTTACTTCTCCATAAGCCTTTAAGGGTACACACTGCCCCCCAATTAAATTCGATCTGTAAAGCAGGAAGTATAAACACAAGCCAACAGAAGAGTAGTTCGTTTTCAGAGAAACAAGCGATTGATTCCAAAGGCAGTTTGTGGCTCCTGCAGAGGCTGGGGGACAAAACAGACTAGTCTCAGGTAAGGGCTCCAAACTCTGTTTCTGCCACTAGTTAGTTAGTAAGTGACTGGGGATGAGCACTCTATAGCTGTGAGTTGTGGGGTTTACTCATCCCTGCACTGAGATCCCAGGGCCTGCTTCTGAACCTTCGTTAGGCCAGCCCTATGATGAAAGCTCCAGTCGATGCCAGCTCGTCTCATCAAGAGCTGATCAAATTAGATCTTCAGTCCTACTTTTCAAGGAAATAATTGCATGCTTTATTCTAAAATTTAAAGGTCCATTCTCATAACAAAGCAGTCCCCTTTTAGTTTATCAGCACATAGCAAGCATTCCCTCTTTGTATTTAATTCTATGAAGGCTGATATACTTTTATTGTATTTTTTAATGATGTCTCCCTAGTTTGTTTGTTTTTTATAATACTTCAACAAATGTTTCAAGACAGAAACAGTTGCAAATGATCTCAGATGATCTATGTGTATCCACAATCTTGAGGACATGCCTGTCTGTCCCCTCAGTGGGGTGAAGAGCTCTGAGATAGGATGGCAGTGGGTGTGTGGCAACCGTGTAAGCGTACATTTCTTTGACAGAAAGAATGTTTATGCTTTTCATTTACTTAACATATTTCTGATCCCTCCATGTGTCAGATGACTAAGGCATGAGGCACAGTGTCAGGTGTGTTCTCCATACTACTAAGAAGCAGGCAGCCCACACCCGGGGAAACTACACACTTGCTTTAAACCCTTCTGCAGCAACCAACCACATAGTTTCATCCCTGTAGGCACAGTGTCTGTCTTTGATTGCACTTGGTCATTCTGTGTAGCAAAGTAGAAAAAAGTCCCCAGATGGCTCCCAGCCATGGTGCAAACAGACATATGGTCTTAGAGGGCCAGGTTCTTACCCGTTCTTGTATGAAATGGCTTAGTGGGGGAGGCTTAATCCGCTTTACTTACTTTTCTCTGCTTTTGATGATGATGATGATGACGACTGTCTTGGGGGAATGCCCAGTTAGAACTCATTGTCTTCCTACAAGGAATTATCAGACACCAAATTGGCATGGAGCTGGCAAAAAGAAAATGATCCATAGGAAAAATGCTCAGATGTGTAGGGAAGGGAAGTGGTAATTATTTCCAGCGTCCTTATTTTATGTTTTGTATAATTGAGTTTATAGTGCTCTGTACTGCTTGTAGTATCTGCTATCACCTCATCTGCTAGATGTTTACGAAGAAAAGCCCAAAAAAGCGCTGGCCCTCAGTAAACTGAACCTGTAAGAGAGAGAAGGCACAAGCCCTAAATAGTAAGTCAGCTCCGGAGCCCAGACACTGGCCAGAGTTCCAGGCTACTCTGCGGAGGTTATGCTTCAATTATTTATACTGTGGCCCTAGGTTAGCCCAATAAAGATGACAATTCCAGCCAAATCACTTTATATTTCATGCTAACAACATCAGCCACGGATTAACTAATTTTCCCTCAAACTGATTTTTTTAAACTTCCCATAACAATTATGATGCATCTTGTGGCTATTTCTGTGAGCTAACTGTACATGTGGCAGTCTGACCATATATACAAACTGAGACTGACTCTTAGCAACAGAGCATGCTGCCTCAGTGACGTCAGAGGCTCTGTTCTCTTTTCTCTATGCCTTCTTCAGGTGAAGCTGCGCTCTCTGGGTGCGCTGGCCAGCGAGACAGTTCCAATGGCCTGGAGCCTCTGCCTGTTATCACACTAGCCTTGTCTGTCTGCACCTCCTAGCCCCAGACCTTCCACTAACCAAGTTGTCCTTTCTGTTTCCTTCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCCCAGACCTTCCACTAAC
60.04
GGAAGCCTCTGAAAAGCCCT
59.96
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTCTGTCTGCACCTCCTAGC
59.83
GGAAGCCTCTGAAAAGCCCT
59.96
164
PCR template sequence:
TGGCCTGGAGCCTCTGCCTGTTATCACACTAGCCTTGTCTGTCTGCACCTCCTAGCCCCAGACCTTCCACTAACCAAGTTGTCCTTTCTGTTTCCTTCTGGTAAGGCAGCAGCCTTGGAGGGGTTTTTCTTTCCTTTGTGTCCGGGTAGAAATCAAATAAAATGGTATTTCAGGTATTTCAGGGCTTTTCAGAGGCTTCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
25
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(1), mmu-miR-7b-5p(1), mmu-let-7b-5p(1), mmu-miR-30e-5p(1), mmu-miR-30a-5p(1), mmu-miR-130a-3p(1), mmu-miR-30c-5p(1), mmu-miR-328-3p(1), mmu-miR-7a-5p(1), mmu-miR-138-5p(1), mmu-miR-185-5p(1), mmu-miR-495-3p(1), mmu-miR-30d-5p(1), mmu-miR-30b-5p(1), mmu-miR-130b-3p(1), mmu-miR-721(1), mmu-miR-362-5p(1), mmu-miR-340-5p(1), mmu-miR-301a-3p(1), mmu-miR-98-5p(1), mmu-miR-690(1), mmu-miR-673-5p(1), mmu-miR-532-5p(1), mmu-miR-3087-3p(1), mmu-miR-452-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGTTTCCTTCTGGTAAGGCAGCAGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.787629813
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page