top of page
mmu_ciOsbpl8_686
Basic information of circular RNA
PanCircBase ID:
mmu_ciOsbpl8_686
mm39_Chr. Position ID:
chr10|111112419|111113105|+
Gene name:
Osbpl8
Transcript:
ENSMUST00000105275.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
14
Exon/intron offsets:
0
Genomic length:
686
Exon/intron sizes in nt:
686
Flanking exon/introns:
chr10:111112419-111113107
Splice length:
686
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGAGAAGTGTGTGTTACCAAGAGGATCTGTAGGTGCTAGGACATTTTCTGAGAAAGTCTTACTTGGTAAATCACTGTTATTTAGCTTATTGCTAGGTAAGCTTTGATAAGCATTGAACATTCTAGAGCAGGACACTACTGAATACCATGCTGCTGAGCATGGCTGTCGTCACTTGGCTCTTGCGTGGCTCCAGTCAGGCTGCCCACCAGTTTATAATTCTCCTTACATTTGGCTGGGATAGATGATTGCTTTCCATGGTCATCTCATGGCTTTTGAGGAAAGAATTTATTAGTTCCTCGGCTGGTAGTGCTTCCCTACATTGTTAACAGCACAAAAACTGGGTTTTCTGAGCTTTGTGCACCTGCTGTTGGGGTTGGGGGCAGGGCTGGAGGGGCTCCTAAAACCCTCCTCTCTGAAAGCTGTATTATAATCTCAAGTTAGAAATGGTGTATTATCATTTCCACCCAAAATCAAACTTTTTTTTTTTTTTTTTTGTCTTGTGGTACGATTGCCAGGGGGTCCATTTCCTTAGAGACAGAAATCTGGTTACCGTAGTGACTAATACTTATGCTGTTGCTTACCAGCTGTCCTCTTACTCGTGCTGACTTCTGAACGCTTGCTATTAGCACAGTTGCAAGCTTGTTTTCTTAAATGTCCTGACTTTGACTTTTCCTGTGTTCACT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGTCCTCTTACTCGTGCT
59.47
AGCACCTACAGATCCTCTTGG
58.89
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGTCCTCTTACTCGTGCT
59.47
TGTCCTAGCACCTACAGATCCT
59.75
146
PCR template sequence:
GCTGTCCTCTTACTCGTGCTGACTTCTGAACGCTTGCTATTAGCACAGTTGCAAGCTTGTTTTCTTAAATGTCCTGACTTTGACTTTTCCTGTGTTCACTGTATGAGAAGTGTGTGTTACCAAGAGGATCTGTAGGTGCTAGGACATTTTCTGAGAAAGTCTTACTTGGTAAATCACTGTTATTTAGCTTATTGCTAGGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-16-5p(2), mmu-miR-103-3p(1), mmu-miR-150-5p(1), mmu-miR-322-5p(1), mmu-miR-335-5p(1), mmu-miR-214-3p(1), mmu-miR-107-3p(1), mmu-miR-499-5p(1), mmu-miR-369-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCTGTGTTCACTGTATGAGAAGTGT
siRNA sets
TCTCATACAGTGAACACAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.810998772
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page