top of page
mmu_circ4932438A13Rik_1514
Basic information of circular RNA
PanCircBase ID:
mmu_circ4932438A13Rik_1514
mm39_Chr. Position ID:
chr3|37050463|37065153|+
Gene name:
4932438A13Rik
Transcript:
ENSMUST00000057272.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
52,53,54,55,56,57,58,59,60
Exon/intron offsets:
0,1875,3701,6255,7434,8524,10670,12079,14630
Genomic length:
14690
Exon/intron sizes in nt:
239,245,106,98,186,169,212,199,60
Flanking exon/introns:
chr3:37049130-37050463|chr3:37065153-37065716
Splice length:
1514
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CCCACAGCCTATGAAAGAAGATATTGCAACCCCACTGCCTTCTGAAAAAACCCCAACAAGTGTTAATCAAACTCCTATTGAAACAAATGAATTTCCTCAACTCCCAGAAGGCTTAGAGAAGAAGCCTATTGTTCTCAAGTTCAGCGCTATGTTAGATGGCATAGCCATTGGAGCAGCACTCTTACCATCACTGAAGGCAGAGTACAAGATGGGGAGAATGAGAAGCCATGGGATGACAGGTGCACAGACAAGGTTTACATTTGAGTTACCAAATCACAGGTTGCGCTTTACTTCAAAAGTTTCTGCGACAGATATGTCAACTATCCCTCCTTCTGCAAGTCTTAACCTTCCGCCTGTTACCATGTCAGGGAAATACATTATGGAAGAACATGATAGTTACTCAGATCAAGTGTGGAGTATAGATGAACTGCCTTCTAAACAAGGGTACTATTTACAAGGGAATTATCTACGTTGTGTGGCAGAAGTTGGTTCCTTTGAACACAATCTCACAACAGATCTTCTAAACCACTTGGTGTTTGTACAGAAAGTGTTCATGAAGGAAGTGAATGAAGTAATACAGAAGGTGTCTGGTGGGGAGCAGCCTATCCCTCTCTGGAATGAACATGACGGAACAACAGATGGAGATAAGCCGAAAATTCTCCTCTACTCCCTGAATTTACAGTTTAAGGGTATTCAGGTAACAGCCACCACACCTTCAATGAGAGCTGTGAGATTTGAGACTGGATTGATTGAATTGGAACTTTCAAACCGACTTCAAACCAAAGCCTCACCAGGAAGCAGCAGCTATCTGAAATTATTTGGTAAATGCCAAGTGGACTTAAATCTGGCATTAGGGCAAATTGTCAAACATCAGGTTTATGAAGAAGCTGGTTCTGATTTTCATCAAGTTGCCTATTTTAAAACTAGAATTGGACTAAGGAACGCCCTTCGAGAGGAAATCAGTGGTTCTTCAGATAGGGAAGCTGTGCTTATTACTCTGAATAGACCAATTGTTTATGCACAACCTGTGGCTTTTGATAGAGCTGTTCTGTTTTGGCTGAATTATAAAGCTGCCTATGACAACTGGAATGAACAACGAATGGCTTTACATAAGGATATTCATATGGCTACAAAGGAAGTGGTAGACATGCTCCCTGGTATCCAGCAGACATCAGCCCAGGCCTTTGGGACTCTCTTCCTCCAGCTAACTGTGAATGATCTAGGAATTTGCCTCCCTATAACAAATACCGCACAGTCTAACCACACTGGAGACCTGGACACTGGCTCTGCTCTAGTGCTGACCATTGAAAGTACTCTCATCACTGCATGCTCCTCAGAGTCTCTGGTTAGCAAAGGCCATTTCAAGAACTTTTGTATCCGTTTTGCTGATGGCTTTGAGACATCATGGGATGACTGGAAACCAGAAATCCGTGGAGATCTAGTAATGAATGCTTGTGTAGTTCCAGATGGTACCTACGAGGTTTGTTCAAGGACTACAGGACAAGCTGCAGCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAAACCAGAAATCCGTGGA
59.58
AAGGCAGTGGGGTTGCAATA
59.89
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAAACCAGAAATCCGTGGA
59.58
TTCAGAAGGCAGTGGGGTTG
60.18
146
PCR template sequence:
TGGAAACCAGAAATCCGTGGAGATCTAGTAATGAATGCTTGTGTAGTTCCAGATGGTACCTACGAGGTTTGTTCAAGGACTACAGGACAAGCTGCAGCTGCCCACAGCCTATGAAAGAAGATATTGCAACCCCACTGCCTTCTGAAAAAACCCCAACAAGTGTTAATCAAACTCCTATTGAAACAAATGAATTTCCTCAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-199a-5p(1), mmu-miR-135a-5p(1), mmu-miR-34c-5p(1), mmu-miR-495-3p(1), mmu-miR-499-5p(1), mmu-miR-384-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-673-5p(1), mmu-miR-452-3p(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CAAGCTGCAGCTGCCCACAGCCTATG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC4932438A13RIK_1514_ORF_1
0.9824
0.058404534
0.999550185
1518
ORF sequence:
ATGAAAGAAGATATTGCAACCCCACTGCCTTCTGAAAAAACCCCAACAAGTGTTAATCAAACTCCTATTGAAACAAATGAATTTCCTCAACTCCCAGAAGGCTTAGAGAAGAAGCCTATTGTTCTCAAGTTCAGCGCTATGTTAGATGGCATAGCCATTGGAGCAGCACTCTTACCATCACTGAAGGCAGAGTACAAGATGGGGAGAATGAGAAGCCATGGGATGACAGGTGCACAGACAAGGTTTACATTTGAGTTACCAAATCACAGGTTGCGCTTTACTTCAAAAGTTTCTGCGACAGATATGTCAACTATCCCTCCTTCTGCAAGTCTTAACCTTCCGCCTGTTACCATGTCAGGGAAATACATTATGGAAGAACATGATAGTTACTCAGATCAAGTGTGGAGTATAGATGAACTGCCTTCTAAACAAGGGTACTATTTACAAGGGAATTATCTACGTTGTGTGGCAGAAGTTGGTTCCTTTGAACACAATCTCACAACAGATCTTCTAAACCACTTGGTGTTTGTACAGAAAGTGTTCATGAAGGAAGTGAATGAAGTAATACAGAAGGTGTCTGGTGGGGAGCAGCCTATCCCTCTCTGGAATGAACATGACGGAACAACAGATGGAGATAAGCCGAAAATTCTCCTCTACTCCCTGAATTTACAGTTTAAGGGTATTCAGGTAACAGCCACCACACCTTCAATGAGAGCTGTGAGATTTGAGACTGGATTGATTGAATTGGAACTTTCAAACCGACTTCAAACCAAAGCCTCACCAGGAAGCAGCAGCTATCTGAAATTATTTGGTAAATGCCAAGTGGACTTAAATCTGGCATTAGGGCAAATTGTCAAACATCAGGTTTATGAAGAAGCTGGTTCTGATTTTCATCAAGTTGCCTATTTTAAAACTAGAATTGGACTAAGGAACGCCCTTCGAGAGGAAATCAGTGGTTCTTCAGATAGGGAAGCTGTGCTTATTACTCTGAATAGACCAATTGTTTATGCACAACCTGTGGCTTTTGATAGAGCTGTTCTGTTTTGGCTGAATTATAAAGCTGCCTATGACAACTGGAATGAACAACGAATGGCTTTACATAAGGATATTCATATGGCTACAAAGGAAGTGGTAGACATGCTCCCTGGTATCCAGCAGACATCAGCCCAGGCCTTTGGGACTCTCTTCCTCCAGCTAACTGTGAATGATCTAGGAATTTGCCTCCCTATAACAAATACCGCACAGTCTAACCACACTGGAGACCTGGACACTGGCTCTGCTCTAGTGCTGACCATTGAAAGTACTCTCATCACTGCATGCTCCTCAGAGTCTCTGGTTAGCAAAGGCCATTTCAAGAACTTTTGTATCCGTTTTGCTGATGGCTTTGAGACATCATGGGATGACTGGAAACCAGAAATCCGTGGAGATCTAGTAATGAATGCTTGTGTAGTTCCAGATGGTACCTACGAGGTTTGTTCAAGGACTACAGGACAAGCTGCAGCTGCCCACAGCCTATGA
Peptide sequence:
MKEDIATPLPSEKTPTSVNQTPIETNEFPQLPEGLEKKPIVLKFSAMLDGIAIGAALLPSLKAEYKMGRMRSHGMTGAQTRFTFELPNHRLRFTSKVSATDMSTIPPSASLNLPPVTMSGKYIMEEHDSYSDQVWSIDELPSKQGYYLQGNYLRCVAEVGSFEHNLTTDLLNHLVFVQKVFMKEVNEVIQKVSGGEQPIPLWNEHDGTTDGDKPKILLYSLNLQFKGIQVTATTPSMRAVRFETGLIELELSNRLQTKASPGSSSYLKLFGKCQVDLNLALGQIVKHQVYEEAGSDFHQVAYFKTRIGLRNALREEISGSSDREAVLITLNRPIVYAQPVAFDRAVLFWLNYKAAYDNWNEQRMALHKDIHMATKEVVDMLPGIQQTSAQAFGTLFLQLTVNDLGICLPITNTAQSNHTGDLDTGSALVLTIESTLITACSSESLVSKGHFKNFCIRFADGFETSWDDWKPEIRGDLVMNACVVPDGTYEVCSRTTGQAAAAHSL
IRESfinder result
IRESfinder score
0.624872666
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page