top of page
mmu_circBach2_1590
Basic information of circular RNA
PanCircBase ID:
mmu_circBach2_1590
mm39_Chr. Position ID:
chr4|32561777|32563367|+
Gene name:
Bach2
Transcript:
ENSMUST00000108180.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
1590
Exon/intron sizes in nt:
1590
Flanking exon/introns:
chr4:32501867-32561777|chr4:32563367-32575239
Splice length:
1590
Other database IDs:
circBase: mmu_circ_0011556, CIRCpedia: MMU_CIRCpedia_37371, circAtlas: mmu-Bach2_0003
circBase: hsa_circ_0132668, circAtlas: hsa-BACH2_0003, CIRCpedia: HSA_CIRCpedia_356423
Human Ortholog IDs:
Mature spliced Sequence:
GTCACGGCCAGGGGCTTTGGGCCACTGCTACAGTTTGCCTACACTGCCAAGCTGTTACTCAGCAGAGAGAACATCCGGGAGGTCATCCGCTGTGCTGAGTTCCTGCGCATGCACAATCTGGAGGACTCCTGCTTCAGCTTCCTGCAGACCCAGCTCCTGAACAGGGAGGATGGCCTGTTTGTTTGCAGAAAGGACAGTGCGTGCCAGCGCCCCCAAGAGGACCATGGGAATTCTGCAGGAGAAGAGGAGGAAGAAGAGGAAACAATGGACTCAGAGACAGCTAGGATGGCTTGCGCCACAGACCAGATGCTCCCAGACCCCATCAGCTTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAAGAAGCCCTGCTCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTGACCCAGTACCCTAGATATAAGAAGTACCAGCTCGCGTGTACCAAGAATGTCTACAGTGCACCCTCACACGGTACCTCAGGGTTTGCGAGCACATTCAGTGAAGACAGTCCTGGCAATAGCCTCAAGCCGGGGCTCCCCATGGGACAGATTAAAAGTGAGCCACCCAGTGAGGAGACCGAGGAGGAGAGCATCACCCTCTGCCTGTCCGGAGATGAGACCGACATCAAAGACAGACCAGGAGATGTCGAGATGGACCGAAAACAACCCAGCCCTGCCCCTACCCCCAGTACCCCTACTGGAGCCGCCTGCCTGGACAGGTCCAGGAGTGTGTCCTCGCCTTCCTGCCTGCGGTCTCTGTTCGGTATAACGAAAGGTGTGGAGTCCACTGGCCTGCCCAGTACATCTCAGCAACCCTTAGTCAGGAGCTCAGCGTGCCCTTTCAACAAGGGGATCTCTCAGGGTGACCTTAAAACTGATTACACCCCTTTGGCAGGGAATTACGGACAGCCCCACGTGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGCAGGAGGGAGAGCTGGACCGCCGGAGCGTCATCTTCTCCGCAAGCGCGTGTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGTGGGAGCTGGCCAGTCCCTCCCCAGCTCCCAGGCTTACTCCCACAGCGGACTGATGGCTGACCACTTGCCAGGAAGGATACGGCCCAACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTCACCTCCGCTCGAGACCAGGACTAGGACCTCCAGCTCCTGCTCCTCGTATTCCTACGCAGAGGACGGGAGTGGGGGCTCCCCCTGCAGCCTCCCTCTCTGTGAGTTCTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACCAAGTCCGACCCCAGATTAAATGTGAGCAGTCTTACGGAACCAATTCCAGTGACGAGTCTGGATCATTCTCGGAAGCAGACAGTGAGTCGTGTCCTGTGCAGGACAGGGGCCAGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGAGCAGTCTTACGGAACCA
60
TGACCTCCCGGATGTTCTCT
59.96
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGAGCAGTCTTACGGAACCA
60
CTCCCGGATGTTCTCTCTGC
59.9
176
PCR template sequence:
TAAATGTGAGCAGTCTTACGGAACCAATTCCAGTGACGAGTCTGGATCATTCTCGGAAGCAGACAGTGAGTCGTGTCCTGTGCAGGACAGGGGCCAGGAGGTCACGGCCAGGGGCTTTGGGCCACTGCTACAGTTTGCCTACACTGCCAAGCTGTTACTCAGCAGAGAGAACATCCGGGAGGTCATCCGCTGTGCTGAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-210-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-298-5p(1), mmu-miR-125b-5p(1), mmu-miR-138-5p(1), mmu-miR-339-5p(1), mmu-miR-495-3p(1), mmu-miR-149-5p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-96-5p(1), mmu-miR-34b-5p(1), mmu-miR-705(1), mmu-miR-207(1), mmu-miR-697(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGGGGCCAGGAGGTCACGGCCAGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCBACH2_1590_ORF_1
0.8234
0.276939086
0.999999997
3072
ORF sequence:
ATGCACAATCTGGAGGACTCCTGCTTCAGCTTCCTGCAGACCCAGCTCCTGAACAGGGAGGATGGCCTGTTTGTTTGCAGAAAGGACAGTGCGTGCCAGCGCCCCCAAGAGGACCATGGGAATTCTGCAGGAGAAGAGGAGGAAGAAGAGGAAACAATGGACTCAGAGACAGCTAGGATGGCTTGCGCCACAGACCAGATGCTCCCAGACCCCATCAGCTTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAAGAAGCCCTGCTCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTGACCCAGTACCCTAGATATAAGAAGTACCAGCTCGCGTGTACCAAGAATGTCTACAGTGCACCCTCACACGGTACCTCAGGGTTTGCGAGCACATTCAGTGAAGACAGTCCTGGCAATAGCCTCAAGCCGGGGCTCCCCATGGGACAGATTAAAAGTGAGCCACCCAGTGAGGAGACCGAGGAGGAGAGCATCACCCTCTGCCTGTCCGGAGATGAGACCGACATCAAAGACAGACCAGGAGATGTCGAGATGGACCGAAAACAACCCAGCCCTGCCCCTACCCCCAGTACCCCTACTGGAGCCGCCTGCCTGGACAGGTCCAGGAGTGTGTCCTCGCCTTCCTGCCTGCGGTCTCTGTTCGGTATAACGAAAGGTGTGGAGTCCACTGGCCTGCCCAGTACATCTCAGCAACCCTTAGTCAGGAGCTCAGCGTGCCCTTTCAACAAGGGGATCTCTCAGGGTGACCTTAAAACTGATTACACCCCTTTGGCAGGGAATTACGGACAGCCCCACGTGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGCAGGAGGGAGAGCTGGACCGCCGGAGCGTCATCTTCTCCGCAAGCGCGTGTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGTGGGAGCTGGCCAGTCCCTCCCCAGCTCCCAGGCTTACTCCCACAGCGGACTGATGGCTGACCACTTGCCAGGAAGGATACGGCCCAACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTCACCTCCGCTCGAGACCAGGACTAGGACCTCCAGCTCCTGCTCCTCGTATTCCTACGCAGAGGACGGGAGTGGGGGCTCCCCCTGCAGCCTCCCTCTCTGTGAGTTCTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACCAAGTCCGACCCCAGATTAAATGTGAGCAGTCTTACGGAACCAATTCCAGTGACGAGTCTGGATCATTCTCGGAAGCAGACAGTGAGTCGTGTCCTGTGCAGGACAGGGGCCAGGAGGTCACGGCCAGGGGCTTTGGGCCACTGCTACAGTTTGCCTACACTGCCAAGCTGTTACTCAGCAGAGAGAACATCCGGGAGGTCATCCGCTGTGCTGAGTTCCTGCGCATGCACAATCTGGAGGACTCCTGCTTCAGCTTCCTGCAGACCCAGCTCCTGAACAGGGAGGATGGCCTGTTTGTTTGCAGAAAGGACAGTGCGTGCCAGCGCCCCCAAGAGGACCATGGGAATTCTGCAGGAGAAGAGGAGGAAGAAGAGGAAACAATGGACTCAGAGACAGCTAGGATGGCTTGCGCCACAGACCAGATGCTCCCAGACCCCATCAGCTTTGAGGCCACTGCCATCCCAGTAGCAGAGAAAGAAGAAGCCCTGCTCCCTGAGTCTGAGGTACCCACAGACACCAAGGAAAACTCAGAAAAGGGTGCATTGACCCAGTACCCTAGATATAAGAAGTACCAGCTCGCGTGTACCAAGAATGTCTACAGTGCACCCTCACACGGTACCTCAGGGTTTGCGAGCACATTCAGTGAAGACAGTCCTGGCAATAGCCTCAAGCCGGGGCTCCCCATGGGACAGATTAAAAGTGAGCCACCCAGTGAGGAGACCGAGGAGGAGAGCATCACCCTCTGCCTGTCCGGAGATGAGACCGACATCAAAGACAGACCAGGAGATGTCGAGATGGACCGAAAACAACCCAGCCCTGCCCCTACCCCCAGTACCCCTACTGGAGCCGCCTGCCTGGACAGGTCCAGGAGTGTGTCCTCGCCTTCCTGCCTGCGGTCTCTGTTCGGTATAACGAAAGGTGTGGAGTCCACTGGCCTGCCCAGTACATCTCAGCAACCCTTAGTCAGGAGCTCAGCGTGCCCTTTCAACAAGGGGATCTCTCAGGGTGACCTTAAAACTGATTACACCCCTTTGGCAGGGAATTACGGACAGCCCCACGTGGGCCAGAAGGATGTGTCCAACTTCGCAATGGGGTCGCCACTCAGGGGGCCCGGGCCGGAGACTCTCTGTAAGCAGGAGGGAGAGCTGGACCGCCGGAGCGTCATCTTCTCCGCAAGCGCGTGTGACCAACCGAACACTCCAGTGCATTCATACTCTGCGGTGAGCAATTTGGACAAAGACCTTTCGGAGCCGGTGCCAAAAAGTCTATGGGTGGGAGCTGGCCAGTCCCTCCCCAGCTCCCAGGCTTACTCCCACAGCGGACTGATGGCTGACCACTTGCCAGGAAGGATACGGCCCAACACCAGCTGCCCGGTGCCAATCAAAGTCTGTCCTCGCTCACCTCCGCTCGAGACCAGGACTAGGACCTCCAGCTCCTGCTCCTCGTATTCCTACGCAGAGGACGGGAGTGGGGGCTCCCCCTGCAGCCTCCCTCTCTGTGAGTTCTCCTCTTCGCCCTGTTCCCAGGGAGCCAGATTCCTTGCCACGGAACATCAGGAACCAGGCCTGATGGGAGATGGAATGTACAACCAAGTCCGACCCCAGATTAAATGTGAGCAGTCTTACGGAACCAATTCCAGTGACGAGTCTGGATCATTCTCGGAAGCAGACAGTGAGTCGTGTCCTGTGCAGGACAGGGGCCAGGAG
Peptide sequence:
MHNLEDSCFSFLQTQLLNREDGLFVCRKDSACQRPQEDHGNSAGEEEEEEETMDSETARMACATDQMLPDPISFEATAIPVAEKEEALLPESEVPTDTKENSEKGALTQYPRYKKYQLACTKNVYSAPSHGTSGFASTFSEDSPGNSLKPGLPMGQIKSEPPSEETEEESITLCLSGDETDIKDRPGDVEMDRKQPSPAPTPSTPTGAACLDRSRSVSSPSCLRSLFGITKGVESTGLPSTSQQPLVRSSACPFNKGISQGDLKTDYTPLAGNYGQPHVGQKDVSNFAMGSPLRGPGPETLCKQEGELDRRSVIFSASACDQPNTPVHSYSAVSNLDKDLSEPVPKSLWVGAGQSLPSSQAYSHSGLMADHLPGRIRPNTSCPVPIKVCPRSPPLETRTRTSSSCSSYSYAEDGSGGSPCSLPLCEFSSSPCSQGARFLATEHQEPGLMGDGMYNQVRPQIKCEQSYGTNSSDESGSFSEADSESCPVQDRGQEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFLQTQLLNREDGLFVCRKDSACQRPQEDHGNSAGEEEEEEETMDSETARMACATDQMLPDPISFEATAIPVAEKEEALLPESEVPTDTKENSEKGALTQYPRYKKYQLACTKNVYSAPSHGTSGFASTFSEDSPGNSLKPGLPMGQIKSEPPSEETEEESITLCLSGDETDIKDRPGDVEMDRKQPSPAPTPSTPTGAACLDRSRSVSSPSCLRSLFGITKGVESTGLPSTSQQPLVRSSACPFNKGISQGDLKTDYTPLAGNYGQPHVGQKDVSNFAMGSPLRGPGPETLCKQEGELDRRSVIFSASACDQPNTPVHSYSAVSNLDKDLSEPVPKSLWVGAGQSLPSSQAYSHSGLMADHLPGRIRPNTSCPVPIKVCPRSPPLETRTRTSSSCSSYSYAEDGSGGSPCSLPLCEFSSSPCSQGARFLATEHQEPGLMGDGMYNQVRPQIKCEQSYGTNSSDESGSFSEADSESCPVQDRGQE
IRESfinder result
IRESfinder score
0.426220905
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page